No. The SE/30 does not physically have the ability to decode a second drive. It does this via a specialized GLU chip which splits the ENBL1 signal from the IWM/SWIM. The Macintosh Portable is the only other Mac with the custom GLU which allows support for 3 total FDDs.
Here is the step-by-step for the official Apple OEM SE-to-SE/30 upgrade kit, which involves replacing the chassis and the front bezel. It is likely by the time they issued the SE-FDHD that Apple decided to include the identical internals so all one had to do was slide in the logicboard upgrade.
http://home24.inet.tele.dk/ccadams/se/se30.html