I generally use my 12" for the b&w G3 which has OS 10.2.8. When starting up, the display stays black until the boot panel appears; ie, I don't ever see the screen with the gray Apple logo.
My guess is that the low-level video stuff doesn't support the low-resolution, but as soon as OS X has more components loaded, then it can toggle the display back on.
(which is set to 1920x1080) Did you actually hook your Mac up to a 12" RGB, or did you simply set the res to 512x384?
Just curious...I didn't think that modern video cards took to running those older fixed sync displays very easily.